Glycoside Hydrolase family 5 Populus genes in RNA-seq libraries




ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH5POPTR_0016s14550 (EnsemblPlants link)endo-β-1,4-mannanase (Man6;PtrMan6) Populus trichocarpa AFX59322.1(NCBI query)K7WJ21(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0016s14550; this endo-β-1,4-mannanase (Man6;PtrMan6) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH5POPTR_0006s11040 (EnsemblPlants link)PtrMan4 Populus trichocarpa EEE92714.1 (NCBI query)B9HDK2(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0006s11040; this PtrMan4 transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH5POPTR_0005s12250 (EnsemblPlants link)unknown (WS0124_C10) Populus trichocarpa ABK95661.1 (NCBI query)A9PH08(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0005s12250; this unknown (WS0124_C10) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH5POPTR_0013s13400 (EnsemblPlants link)unknown (WS0126_F13) Populus trichocarpa ABK95966.1 (NCBI query)A9PHW3(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0013s13400; this unknown (WS0126_F13) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

 


 
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